STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
six3SIX homeobox 3a. (294 aa)    
Predicted Functional Partners:
pax6
Paired box 6b.
   
 
 0.691
LOC108236314
Solute carrier family 2 member 15b; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
   
  
 0.673
zpr1
ZPR1 zinc finger.
      
 0.667
LOC108232877
Retinal homeobox gene 2.
      
 0.660
lhx2
LIM homeobox 2b.
   
  
 0.657
LOC108232166
Orthodenticle homeobox 2b.
   
 
 0.636
LOC108230967
Retinal homeobox gene 3.
      
 0.631
shh
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
   
  
 0.576
VSX2
Visual system homeobox 2.
   
  
 0.566
Sox2
SRY-box transcription factor 2.
   
 
 0.523
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.