STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108236597Cytochrome P450, family 1, subfamily D, polypeptide 1; Belongs to the cytochrome P450 family. (528 aa)    
Predicted Functional Partners:
LOC108244157
Cytochrome P450, family 3, subfamily A, polypeptide 65.
  
0.598
aasdh
Aminoadipate-semialdehyde dehydrogenase.
  
 0.573
LOC108229396
Cytochrome P450, family 7, subfamily B, polypeptide 1; Belongs to the cytochrome P450 family.
  
   
 0.566
LOC108249307
Aryl hydrocarbon receptor 2.
   
 0.539
arnt
Aryl hydrocarbon receptor nuclear translocator.
    
 0.525
nbn
Nibrin.
    
 0.489
bard1
BRCA1 associated RING domain 1.
    
 0.486
pgrmc1
Progesterone receptor membrane component 1; Belongs to the cytochrome b5 family.
   
 
 0.474
palb2
PALB2_WD40 domain-containing protein.
  
 0.458
ndufab1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.458
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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