RPL5-2 protein (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RPL5-2

Ribosomal protein L5b. (297 aa)

Predicted Functional Partners:

fau

0.999

rpl23a

0.996

rpl9

0.995

rplp0

0.995

RPL27A

0.995

LOC108237811

0.995

rpl27

0.995

Rpl35

0.995

rpl38

0.995

rpl21

0.995

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108237811	RPL27A	ENSKMAP00000009672	ENSKMAP00000003276	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	0.999
LOC108237811	RPL5-2	ENSKMAP00000009672	ENSKMAP00000004662	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L5b.	0.995
LOC108237811	Rpl35	ENSKMAP00000009672	ENSKMAP00000010907	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L35.	0.999
LOC108237811	fau	ENSKMAP00000009672	ENSKMAP00000026703	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.997
LOC108237811	rpl21	ENSKMAP00000009672	ENSKMAP00000012024	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L21.	0.999
LOC108237811	rpl23a	ENSKMAP00000009672	ENSKMAP00000030130	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	0.999
LOC108237811	rpl27	ENSKMAP00000009672	ENSKMAP00000010024	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.999
LOC108237811	rpl38	ENSKMAP00000009672	ENSKMAP00000011145	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	0.999
LOC108237811	rpl9	ENSKMAP00000009672	ENSKMAP00000000048	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L9.	0.999
LOC108237811	rplp0	ENSKMAP00000009672	ENSKMAP00000000223	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.999
RPL27A	LOC108237811	ENSKMAP00000003276	ENSKMAP00000009672	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.999
RPL27A	RPL5-2	ENSKMAP00000003276	ENSKMAP00000004662	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	Ribosomal protein L5b.	0.995
RPL27A	Rpl35	ENSKMAP00000003276	ENSKMAP00000010907	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	Ribosomal protein L35.	0.999
RPL27A	fau	ENSKMAP00000003276	ENSKMAP00000026703	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
RPL27A	rpl21	ENSKMAP00000003276	ENSKMAP00000012024	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	Ribosomal protein L21.	0.999
RPL27A	rpl23a	ENSKMAP00000003276	ENSKMAP00000030130	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	0.999
RPL27A	rpl27	ENSKMAP00000003276	ENSKMAP00000010024	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.999
RPL27A	rpl38	ENSKMAP00000003276	ENSKMAP00000011145	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	0.999
RPL27A	rpl9	ENSKMAP00000003276	ENSKMAP00000000048	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	Ribosomal protein L9.	0.999
RPL27A	rplp0	ENSKMAP00000003276	ENSKMAP00000000223	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.999