STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108231293Muscleblind-like splicing regulator 3. (359 aa)    
Predicted Functional Partners:
pink1
PTEN induced kinase 1.
      
 0.667
LOC108234774
Uncharacterized protein.
      
 0.518
phf5a
PHD finger protein 5A.
   
  
 0.418
sf3b6
Splicing factor 3b, subunit 6.
   
  
 0.415
snrpa
Small nuclear ribonucleoprotein polypeptide A.
   
 
 0.414
zrsr2
Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2.
   
  
 0.409
ENSKMAP00000000365
PAS domain-containing protein.
      
 0.406
LOC108239981
Aryl hydrocarbon receptor nuclear translocator-like 2 protein.
      
 0.406
snw1
SNW domain containing 1.
      
 0.405
cwc15
CWC15 spliceosome associated protein homolog.
      
 0.405
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.