STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snrnp200Small nuclear ribonucleoprotein 200 (U5). (2091 aa)    
Predicted Functional Partners:
snrnp40
Small nuclear ribonucleoprotein 40 (U5).
   
 0.999
prpf8
Pre-mRNA processing factor 8.
   
 0.999
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
   
 0.999
eftud2
Elongation factor Tu GTP binding domain containing 2.
   
 0.999
sf3b3
Splicing factor 3b, subunit 3.
   
 
 0.997
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.997
Snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
 0.997
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
 0.996
sf3b1
Splicing factor 3b, subunit 1.
   
 
 0.996
snrpd1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.996
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.