gtpbp3 protein (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

gtpbp3

GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. (474 aa)

Predicted Functional Partners:

mto1

0.982

trmu

0.962

gtpbp8

0.950

ergic3

0.936

LOC108239950

0.936

LOC108233325

0.936

ergic1

0.936

mrpl15

0.920

mrm3

0.913

mrpl11

0.912

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108233325	ergic3	ENSKMAP00000014892	ENSKMAP00000007185	Si:ch211-225b10.3.	ERGIC and golgi 3.	0.929
LOC108233325	gtpbp3	ENSKMAP00000014892	ENSKMAP00000005199	Si:ch211-225b10.3.	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.936
LOC108233325	trmu	ENSKMAP00000014892	ENSKMAP00000011363	Si:ch211-225b10.3.	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.	0.764
LOC108239950	ergic3	ENSKMAP00000007832	ENSKMAP00000007185	ERGIC and golgi 2.	ERGIC and golgi 3.	0.929
LOC108239950	gtpbp3	ENSKMAP00000007832	ENSKMAP00000005199	ERGIC and golgi 2.	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.936
LOC108239950	trmu	ENSKMAP00000007832	ENSKMAP00000011363	ERGIC and golgi 2.	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.	0.764
ergic1	gtpbp3	ENSKMAP00000026456	ENSKMAP00000005199	Endoplasmic reticulum-golgi intermediate compartment 1.	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.936
ergic1	trmu	ENSKMAP00000026456	ENSKMAP00000011363	Endoplasmic reticulum-golgi intermediate compartment 1.	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.	0.764
ergic3	LOC108233325	ENSKMAP00000007185	ENSKMAP00000014892	ERGIC and golgi 3.	Si:ch211-225b10.3.	0.929
ergic3	LOC108239950	ENSKMAP00000007185	ENSKMAP00000007832	ERGIC and golgi 3.	ERGIC and golgi 2.	0.929
ergic3	gtpbp3	ENSKMAP00000007185	ENSKMAP00000005199	ERGIC and golgi 3.	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.936
ergic3	trmu	ENSKMAP00000007185	ENSKMAP00000011363	ERGIC and golgi 3.	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.	0.764
gtpbp3	LOC108233325	ENSKMAP00000005199	ENSKMAP00000014892	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	Si:ch211-225b10.3.	0.936
gtpbp3	LOC108239950	ENSKMAP00000005199	ENSKMAP00000007832	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	ERGIC and golgi 2.	0.936
gtpbp3	ergic1	ENSKMAP00000005199	ENSKMAP00000026456	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	Endoplasmic reticulum-golgi intermediate compartment 1.	0.936
gtpbp3	ergic3	ENSKMAP00000005199	ENSKMAP00000007185	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	ERGIC and golgi 3.	0.936
gtpbp3	gtpbp8	ENSKMAP00000005199	ENSKMAP00000027108	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	EngB-type G domain-containing protein.	0.950
gtpbp3	mrm3	ENSKMAP00000005199	ENSKMAP00000025730	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	Mitochondrial rRNA methyltransferase 3a.	0.913
gtpbp3	mrpl11	ENSKMAP00000005199	ENSKMAP00000004108	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.912
gtpbp3	mrpl15	ENSKMAP00000005199	ENSKMAP00000020621	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	Mitochondrial ribosomal protein L15.	0.920

page 1 of 3

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About