STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108241078Si:ch1073-228j22.2. (285 aa)    
Predicted Functional Partners:
eloc
Elongin C paralog a; Belongs to the SKP1 family.
    
 0.844
mycbp2
MYC binding protein 2.
    
 
 0.682
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
 0.659
CUL5
Cullin 5; Belongs to the cullin family.
    
 0.607
LOC108248946
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.607
cul1
Cullin 1b; Belongs to the cullin family.
   
 0.569
rnf7
Ring finger protein 7.
    
 0.535
pawr
PRKC, apoptosis, WT1, regulator.
    
 
 0.532
ccdc22
Coiled-coil domain containing 22.
   
 
  0.493
commd2
COMM domain containing 2.
   
 
  0.489
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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