STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdcd6ipProgrammed cell death 6 interacting protein. (880 aa)    
Predicted Functional Partners:
CHMP4B
Charged multivesicular body protein 4B.
   
 0.986
LOC108230313
Charged multivesicular body protein 4C.
   
 0.986
LOC108243665
Charged multivesicular body protein 4Bb.
   
 0.986
ENSKMAP00000022332
Uncharacterized protein.
   
 0.956
mvb12a
Uncharacterized protein.
     
 0.932
LOC108236471
Multivesicular body subunit 12Bb.
     
 0.930
mvb12b
Multivesicular body subunit 12Ba.
     
 0.930
LOC108246114
Syndecan binding protein (syntenin) 2.
    
 0.901
tsg101
Tumor susceptibility 101a.
   
 0.873
LOC108239997
Zgc:123278.
   
 0.873
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.