STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chmp2aCharged multivesicular body protein 2A. (220 aa)    
Predicted Functional Partners:
chmp3
Charged multivesicular body protein 3.
   
0.997
chmp2b
Charged multivesicular body protein 2Bb.
   
0.988
LOC108247440
Chromatin modifying protein 1B.
   
0.988
LOC108237992
Uncharacterized protein.
   
0.988
chmp1a
Charged multivesicular body protein 1A.
   
0.988
ist1
IST1 factor associated with ESCRT-III.
    
 0.975
hgs
Hepatocyte growth factor-regulated tyrosine kinase substrate.
    
 0.975
bag1
Charged multivesicular body protein 5a.
   
 0.952
snf8
Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.
   
 0.952
LOC108230516
Charged multivesicular body protein 5b.
   
 0.952
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.