STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
khdc4KH domain containing 4, pre-mRNA splicing factor. (615 aa)    
Predicted Functional Partners:
luc7l3
LUC7-like 3 pre-mRNA splicing factor.
   
  
 0.649
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
 
 0.488
luc7l
LUC7-like (S. cerevisiae).
   
  
 0.472
LOC108244320
Zgc:158803.
   
  
 0.472
cherp
Calcium homeostasis endoplasmic reticulum protein.
      
 0.442
sf1
Splicing factor 1.
    
 
 0.426
LOC108231059
Far upstream element (FUSE) binding protein 3.
      
 0.408
LOC108241559
Uncharacterized protein.
      
 0.408
incenp
Uncharacterized protein.
      
 0.406
wbp4
Uncharacterized protein.
      
 0.404
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.