STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108234309NPHS2 stomatin family member, podocin. (354 aa)    
Predicted Functional Partners:
nphs1
NPHS1 adhesion molecule, nephrin.
    
 0.707
fat1
FAT atypical cadherin 1a.
    
 
 0.693
LOC108230036
Tight junction protein 1b; Belongs to the MAGUK family.
     
 0.685
LOC108251409
Tight junction protein 1a; Belongs to the MAGUK family.
     
 0.685
spg7
SPG7 matrix AAA peptidase subunit, paraplegin.
   
 0.645
LOC108248112
Si:ch1073-174d20.2; Belongs to the AAA ATPase family.
   
 0.645
LOC108238339
YME1-like 1b.
   
 0.645
LOC108251189
AAA domain-containing protein; Belongs to the AAA ATPase family.
   
 0.645
LOC108244286
BC1 (ubiquinol-cytochrome c reductase) synthesis-like; Belongs to the AAA ATPase family.
   
 0.645
LOC108230238
YME1-like 1a.
   
 0.645
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.