STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108249144Uncharacterized protein. (691 aa)    
Predicted Functional Partners:
LOC108237907
Retinoblastoma binding protein 4, like.
    
 0.615
LOC108232401
Retinoblastoma binding protein 4.
    
 0.615
LOC108249016
Human immunodeficiency virus type I enhancer binding protein 3a.
  
     0.526
LOC108246830
Uncharacterized protein.
  
 
   0.477
LOC108242663
Shisa family member 7.
  
 
  0.475
LOC108239503
Uncharacterized protein.
  
 
  0.468
ppp1r26
Uncharacterized protein.
  
  0.463
KRT222
Keratin 222; Belongs to the intermediate filament family.
  
 
  0.444
rnf166
Ring finger protein 166.
   
 0.431
LOC108231025
Uncharacterized protein.
  
 
   0.426
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.