STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108232417Si:ch211-269e2.1. (1068 aa)    
Predicted Functional Partners:
smc3
Structural maintenance of chromosomes protein.
   
 0.885
smc1a
Structural maintenance of chromosomes protein.
   
 0.860
LOC108244223
Structural maintenance of chromosomes 1B.
   
 0.860
pds5a
PDS5 cohesin associated factor A.
   
 0.839
pds5b
PDS5 cohesin associated factor B.
   
 0.839
LOC108231013
Nipped-B protein.
   
 0.804
nipbl
Nipped-B protein.
   
 0.804
RAD21
RAD21 cohesin complex component.
   
 0.795
ENSKMAP00000007722
RAD21 cohesin complex component like 1.
   
 0.795
LOC108232185
RAD21 cohesin complex component a.
   
 0.795
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.