Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LOC108231301 | LOC108239499 | ENSKMAP00000006211 | ENSKMAP00000013425 | Si:ch211-114c17.1. | tRNA selenocysteine 1 associated protein 1b. | 0.809 |
LOC108231301 | NCBP1 | ENSKMAP00000006211 | ENSKMAP00000004748 | Si:ch211-114c17.1. | Nuclear cap binding protein subunit 1. | 0.761 |
LOC108231301 | cdc5l | ENSKMAP00000006211 | ENSKMAP00000010520 | Si:ch211-114c17.1. | CDC5 cell division cycle 5-like (S. pombe). | 0.833 |
LOC108231301 | ncbp2 | ENSKMAP00000006211 | ENSKMAP00000012915 | Si:ch211-114c17.1. | Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] | 0.791 |
LOC108231301 | pnisr | ENSKMAP00000006211 | ENSKMAP00000003659 | Si:ch211-114c17.1. | Uncharacterized protein. | 0.819 |
LOC108231301 | sf3b1 | ENSKMAP00000006211 | ENSKMAP00000005323 | Si:ch211-114c17.1. | Splicing factor 3b, subunit 1. | 0.836 |
LOC108231301 | snrnp70 | ENSKMAP00000006211 | ENSKMAP00000007434 | Si:ch211-114c17.1. | Small nuclear ribonucleoprotein 70 (U1). | 0.891 |
LOC108231301 | snrpa1 | ENSKMAP00000006211 | ENSKMAP00000004499 | Si:ch211-114c17.1. | Small nuclear ribonucleoprotein polypeptide A. | 0.865 |
LOC108231301 | snrpc | ENSKMAP00000006211 | ENSKMAP00000022000 | Si:ch211-114c17.1. | U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] | 0.868 |
LOC108231301 | trnau1ap | ENSKMAP00000006211 | ENSKMAP00000001539 | Si:ch211-114c17.1. | tRNA selenocysteine 1 associated protein 1a. | 0.809 |
LOC108239499 | LOC108231301 | ENSKMAP00000013425 | ENSKMAP00000006211 | tRNA selenocysteine 1 associated protein 1b. | Si:ch211-114c17.1. | 0.809 |
LOC108239499 | NCBP1 | ENSKMAP00000013425 | ENSKMAP00000004748 | tRNA selenocysteine 1 associated protein 1b. | Nuclear cap binding protein subunit 1. | 0.839 |
LOC108239499 | ncbp2 | ENSKMAP00000013425 | ENSKMAP00000012915 | tRNA selenocysteine 1 associated protein 1b. | Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] | 0.858 |
LOC108239499 | sf3b1 | ENSKMAP00000013425 | ENSKMAP00000005323 | tRNA selenocysteine 1 associated protein 1b. | Splicing factor 3b, subunit 1. | 0.822 |
LOC108239499 | snrnp70 | ENSKMAP00000013425 | ENSKMAP00000007434 | tRNA selenocysteine 1 associated protein 1b. | Small nuclear ribonucleoprotein 70 (U1). | 0.872 |
LOC108239499 | snrpa1 | ENSKMAP00000013425 | ENSKMAP00000004499 | tRNA selenocysteine 1 associated protein 1b. | Small nuclear ribonucleoprotein polypeptide A. | 0.819 |
LOC108239499 | snrpc | ENSKMAP00000013425 | ENSKMAP00000022000 | tRNA selenocysteine 1 associated protein 1b. | U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] | 0.882 |
NCBP1 | LOC108231301 | ENSKMAP00000004748 | ENSKMAP00000006211 | Nuclear cap binding protein subunit 1. | Si:ch211-114c17.1. | 0.761 |
NCBP1 | LOC108239499 | ENSKMAP00000004748 | ENSKMAP00000013425 | Nuclear cap binding protein subunit 1. | tRNA selenocysteine 1 associated protein 1b. | 0.839 |
NCBP1 | cdc5l | ENSKMAP00000004748 | ENSKMAP00000010520 | Nuclear cap binding protein subunit 1. | CDC5 cell division cycle 5-like (S. pombe). | 0.840 |
page 1 of 5