STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mef2cMyocyte enhancer factor 2cb. (483 aa)    
Predicted Functional Partners:
LOC108233125
Mitogen-activated protein kinase.
   
 0.955
LOC108244594
Mitogen-activated protein kinase.
   
 0.955
LOC108233159
Mitogen-activated protein kinase.
   
 0.955
LOC108251047
Mitogen-activated protein kinase.
   
 0.955
LOC108237567
Mitogen-activated protein kinase.
   
 0.955
nkx2-5
NK2 homeobox 5.
    
 
 0.778
prdm1
PR domain containing 1a, with ZNF domain.
      
 0.667
myog
Myogenin.
    
 0.631
Mef2b
MADS-box domain-containing protein.
  
 
0.625
mapk6
Mitogen-activated protein kinase 6.
    
 0.592
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.