STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
otud6bOTU domain-containing protein. (297 aa)    
Predicted Functional Partners:
mysm1
Myb-like, SWIRM and MPN domains 1.
   
 
 0.690
trip12
Thyroid hormone receptor interactor 12.
      
 0.679
yod1
YOD1 deubiquitinase.
      
 0.662
usp10
Ubiquitin carboxyl-terminal hydrolase.
      
 0.628
usp14
Ubiquitin carboxyl-terminal hydrolase.
   
  
 0.603
cops5
COP9 signalosome subunit 5.
   
  
 0.580
usp7
Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family.
   
  
 0.576
usp8
Ubiquitin specific peptidase 8; Belongs to the peptidase C19 family.
   
  
 0.573
usp45
Ubiquitin carboxyl-terminal hydrolase.
   
  
 0.572
usp5
Ubiquitin carboxyl-terminal hydrolase.
      
 0.563
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.