STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDC42EP5CDC42 effector protein 5. (165 aa)    
Predicted Functional Partners:
LOC108247156
CDC42 effector protein (Rho GTPase binding) 3.
     
0.749
LOC108248645
Cell division cycle 42.
    
 0.661
CDC42
Cell division cycle 42.
    
 0.661
leng8
Leukocyte receptor cluster (LRC) member 8.
      
 0.635
ttc13
Tetratricopeptide repeat domain 13.
      
 0.573
shisa2
Shisa family member 2b.
      
 0.568
ndufa3
NADH:ubiquinone oxidoreductase subunit A3.
      
 0.566
LOC108246595
Septin 15; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.
    
 0.565
septin7
Septin 7b; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.
    
 0.565
LOC108235453
Uncharacterized protein.
    
 0.536
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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