STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mier1Mesoderm induction early response 1b, transcriptional regulator. (502 aa)    
Predicted Functional Partners:
dnttip1
Ubiquitin-conjugating enzyme E2C.
    
 
 0.566
CDYL2
Chromodomain Y like 2.
   
 
 0.554
cdyl
Chromodomain protein, Y-like.
   
 
 0.554
anapc15
Anaphase promoting complex subunit 15.
      
 0.489
LOC108231734
BAH domain-containing protein.
    
 
 0.457
bahd1
Bromo adjacent homology domain containing 1.
    
 
 0.457
zzz3
Zinc finger, ZZ-type containing 3.
   
  
 0.415
fam91a1
Family with sequence similarity 91 member A1.
      
 0.408
sap30l
Sap30-like.
      
 0.407
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
      
 0.407
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.