STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fam92aFamily with sequence similarity 92 member A1. (303 aa)    
Predicted Functional Partners:
LOC108245693
DAZ interacting zinc finger protein 1.
    
 0.610
LOC108240408
RAN binding protein 2.
   
 0.534
ND4
NADH-ubiquinone oxidoreductase chain 4; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
    
 
 0.519
zfand4
Zinc finger, AN1-type domain 4.
    
 0.512
LOC108230101
Tetratricopeptide repeat domain 23.
      
 0.471
LOC108229660
DPH-type MB domain-containing protein.
    
 
 0.427
rabgef1
RAB guanine nucleotide exchange factor (GEF) 1.
    
 0.427
LOC108234478
Uncharacterized protein.
    
 0.427
LOC108240957
RAB guanine nucleotide exchange factor (GEF) 1, like.
    
 0.427
LOC108248174
Adhesion G protein-coupled receptor B1a; Belongs to the G-protein coupled receptor 2 family.
    
 0.425
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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