STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108231133MON1 secretory trafficking family member Bb. (608 aa)    
Predicted Functional Partners:
ccz1
CCZ1 homolog, vacuolar protein trafficking and biogenesis associated.
    
 0.970
vps41
Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family.
    
 
 0.894
LOC108246776
Uncharacterized protein.
    
 0.768
armc5
Armadillo repeat containing 5.
    
 0.768
RAB9A
RAB9A, member RAS oncogene family.
    
 0.768
LOC108242073
RAB9B, member RAS oncogene family.
    
 0.768
LOC108241217
RAB7a, member RAS oncogene family.
    
 0.746
LOC108235796
Uncharacterized protein.
    
 0.746
vps39
VPS39 subunit of HOPS complex.
   
 
 0.712
rabgef1
RAB guanine nucleotide exchange factor (GEF) 1.
    
 
 0.634
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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