STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zc2hc1aZinc finger, C2HC-type containing 1A. (311 aa)    
Predicted Functional Partners:
castor2
Cytosolic arginine sensor for mTORC1 subunit 2.
    
 
 0.774
rufy3
RUN and FYVE domain containing 3.
      
 0.633
mios
Missing oocyte, meiosis regulator, homolog (Drosophila).
      
 0.571
LOC108232724
Family with sequence similarity 163 member B, genome duplicate a.
      
 0.565
wdr59
WD repeat domain 59.
      
 0.565
zdhhc22
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
      
 0.564
mettl25
Methyltransferase like 25.
    
 
 0.502
CASTOR1
Cytosolic arginine sensor for mTORC1 subunit 1.
      
 0.489
ECHDC3
Enoyl-CoA hydratase domain containing 3.
      
 0.489
wdr24
WD repeat domain 24.
      
 0.450
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.