STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108239670Kelch-like family member 38a. (582 aa)    
Predicted Functional Partners:
sqstm1
Sequestosome 1.
    
 0.725
dusp27
Dual specificity phosphatase 27; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.
   
  
 0.688
fmnl1
Formin-like 1a.
      
 0.679
myo18b
Myosin XVIIIB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 
 0.673
LOC108233955
Collagen, type IX, alpha 1b.
      
 0.666
osr2
Odd-skipped related transciption factor 2.
    
 0.637
LOC108240497
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.569
CUL3
Cullin 3; Belongs to the cullin family.
    
 0.569
cul1
Cullin 1b; Belongs to the cullin family.
    
 0.544
bbs9
Bardet-Biedl syndrome 9.
    
 0.536
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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