STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108241706RING-type domain-containing protein. (163 aa)    
Predicted Functional Partners:
LOC108233117
E3 ubiquitin-protein ligase.
    
 0.669
LOC108231686
E3 ubiquitin-protein ligase.
    
 0.669
LOC108242005
Tax1 (human T-cell leukemia virus type I) binding protein 1b.
   
 
 0.660
LOC108245537
Uncharacterized protein; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
      
 0.635
hao1
Hydroxyacid oxidase (glycolate oxidase) 1.
      
 0.633
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.619
ube2n
Ubiquitin conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.618
LOC108235081
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.618
tnfaip3
Tumor necrosis factor, alpha-induced protein 3.
   
 
 0.603
LOC108243460
NDRG family member 4.
   
  
 0.567
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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