STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
frg1FSHD region gene 1. (255 aa)    
Predicted Functional Partners:
cwc22
CWC22 spliceosome associated protein homolog.
   
   0.980
prpf8
Pre-mRNA processing factor 8.
    
 
 0.793
prpf19
Pre-mRNA processing factor 19.
    
   0.773
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
    
   0.760
Snrpf
Small nuclear ribonucleoprotein polypeptide F.
    
 
 0.728
snrpd1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
 
 0.721
eftud2
Elongation factor Tu GTP binding domain containing 2.
    
   0.661
bcas2
BCAS2 pre-mRNA processing factor.
   
 
 0.647
cir1
Corepressor interacting with RBPJ, 1.
   
 
 0.646
syf2
SYF2 pre-mRNA-splicing factor.
   
   0.644
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.