STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lnx1Ligand of numb-protein X 1. (765 aa)    
Predicted Functional Partners:
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.704
rps27a
Ribosomal protein S27a.
   
  0.692
ift57
Intraflagellar transport 57 homolog (Chlamydomonas).
    
 0.593
Ift172
Uncharacterized protein.
    
 0.585
ift80
Intraflagellar transport 80 homolog (Chlamydomonas).
    
 0.584
traf3ip1
TNF receptor-associated factor 3 interacting protein 1.
    
 0.581
ubb
Uncharacterized protein.
   
  0.573
ift88
Intraflagellar transport 88 homolog.
    
 0.558
LOC108250564
Protein kinase C, zeta; Belongs to the protein kinase superfamily.
    
 0.547
prkci
Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
    
 0.547
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.