STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108233017Von Willebrand factor A domain containing 1. (515 aa)    
Predicted Functional Partners:
LOC108240425
Desmin a; Belongs to the intermediate filament family.
   
 
 0.519
LOC108230019
Repulsive guidance molecule BMP co-receptor a.
      
 0.491
LOC108237229
Fam20C domain-containing protein.
    
  0.453
LOC108239179
FAM20C golgi associated secretory pathway kinase a.
    
  0.453
LOC108236077
JunB proto-oncogene, AP-1 transcription factor subunit b.
    
 
 0.450
LOC108235705
Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.
    
 0.436
oit3
Oncoprotein induced transcript 3.
    
 0.416
tagln
Transgelin; Belongs to the calponin family.
   
  
 0.416
LOC108239029
Cysteine-rich protein 2.
   
  
 0.406
ENSKMAP00000024388
TROVE domain-containing protein.
    
 0.403
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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