STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
socs6Suppressor of cytokine signaling 6a. (535 aa)    
Predicted Functional Partners:
eloc
Elongin C paralog a; Belongs to the SKP1 family.
    
 0.903
CUL5
Cullin 5; Belongs to the cullin family.
   
 0.777
LOC108248946
CULLIN_2 domain-containing protein; Belongs to the cullin family.
   
 0.777
LOC108237701
Elongin B.
    
 0.749
ELOB
Elongin B.
    
 0.749
rnf7
Ring finger protein 7.
   
 0.702
parp3
Poly [ADP-ribose] polymerase.
    
 
 0.662
commd1
Copper metabolism (Murr1) domain containing 1.
    
 0.653
commd8
COMM domain containing 8.
    
  0.604
pgam5
PGAM family member 5, serine/threonine protein phosphatase, mitochondrial.
      
 0.573
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.