STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zgpatZinc finger, CCCH-type with G patch domain. (531 aa)    
Predicted Functional Partners:
prpf3
PRP3 pre-mRNA processing factor 3 homolog (yeast).
   
   0.698
dnajc10
DnaJ (Hsp40) homolog, subfamily C, member 10.
   
  
 0.605
e4f1
E4F transcription factor 1.
   
    0.589
arfrp1
ADP-ribosylation factor related protein 1.
   
  
 0.587
prpf4
PRP4 pre-mRNA processing factor 4 homolog (yeast).
    
   0.554
slc25a20
Solute carrier family 25 member 20; Belongs to the mitochondrial carrier (TC 2.A.29) family.
 
    
 0.528
garem1
GRB2 associated, regulator of MAPK1.
   
  
 0.526
aph1a
APH1B gamma secretase subunit.
 
    
 0.509
MARCHF6
Membrane associated ring-CH-type finger 6.
   
  
 0.505
LOC108238666
RING-CH-type domain-containing protein.
   
  
 0.505
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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