STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108238944Uncharacterized protein. (702 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.769
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.603
cul1
Cullin 1b; Belongs to the cullin family.
    
 0.601
LOC108245932
NEDD8 ubiquitin like modifier.
   
  0.545
LOC108238649
NEDD8 ubiquitin like modifier.
   
  0.545
LOC108229861
COMM domain containing 4.
    
  0.498
LOC108240408
RAN binding protein 2.
   
 
  0.493
gle1
GLE1 RNA export mediator.
    
 0.472
LOC108240497
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.446
CUL3
Cullin 3; Belongs to the cullin family.
    
 0.446
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.