STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rdh10Retinol dehydrogenase 10a; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (340 aa)    
Predicted Functional Partners:
LOC108245157
Cytochrome P450, family 26, subfamily A, polypeptide 1; Belongs to the cytochrome P450 family.
   
 
 0.963
aldh1a2
Aldehyde dehydrogenase 1 family, member A2; Belongs to the aldehyde dehydrogenase family.
  
 0.946
LOC108240756
Retinol dehydrogenase 1; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
0.933
LOC108228851
Lecithin retinol acyltransferase a.
   
 
 0.920
ENSKMAP00000020312
Lecithin retinol acyltransferase b, tandem duplicate 1.
   
 
 0.920
LOC108250623
Cytochrome P450, family 27, subfamily C, polypeptide 1; Belongs to the cytochrome P450 family.
   
 
 0.920
LOC108241705
Retinoid isomerohydrolase RPE65 a.
   
 
 0.914
LOC108249795
Retinoid isomerohydrolase RPE65 b.
   
 
 0.914
LOC108241110
O-acyltransferase.
     
 0.908
DGAT1
O-acyltransferase.
     
 0.908
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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