STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stimateMusculoskeletal, embryonic nuclear protein 1b. (82 aa)    
Predicted Functional Partners:
LOC108232015
Urotensin 2, alpha.
     
 0.718
LOC108235205
Homeobox protein HOXC12a.
      
 0.659
ENSKMAP00000001210
Protein kinase domain-containing protein.
    
 0.550
LOC108231402
Macrophage stimulating 1 receptor a.
    
 0.550
ENSKMAP00000014853
Sema domain-containing protein.
    
 0.550
mst1r
Macrophage stimulating 1 receptor b.
    
 0.550
ppard
Peroxisome proliferator-activated receptor delta b.
    
 0.540
myom1
Myomesin 1b.
   
 0.519
pag1
Phosphoprotein membrane anchor with glycosphingolipid microdomains 1.
    
 0.494
mgrn1
Mahogunin, ring finger 1b.
      
 0.491
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.