STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFMBT1Scm like with four mbt domains 1. (866 aa)    
Predicted Functional Partners:
LOC108237626
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1.
     
 0.687
LOC108244391
Opsin 1 (cone pigments), long-wave-sensitive, 1.
     
 0.662
rnf2
Ring finger protein 2.
    
 0.580
RING1
Ring finger protein 1.
    
 0.580
rybp
RING1 and YY1 binding protein b.
    
 0.545
YAF2
YY1 associated factor 2.
    
 0.545
yaf2
YY1 associated factor 2.
    
 0.545
eed
Embryonic ectoderm development.
   
 0.523
pcgf5
Polycomb group ring finger 5a.
   
 0.502
PCGF3
Polycomb group ring finger 3.
   
 0.498
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.