STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108235969Tripartite motif containing 3a. (771 aa)    
Predicted Functional Partners:
ubb
Uncharacterized protein.
   
 0.667
LOC108237021
ADP-ribosylation factor interacting protein 2b.
      
 0.659
LOC108235975
ADP-ribosylation factor interacting protein 2a.
      
 0.659
LOC108235958
Dachsous cadherin-related 1a.
      
 0.658
rps27a
Ribosomal protein S27a.
    
  0.656
ENSKMAP00000027842
TPR_REGION domain-containing protein.
    
 0.648
trpc4
Transient receptor potential cation channel, subfamily C, member 4a; Belongs to the transient receptor (TC 1.A.4) family.
    
 
 0.642
LOC108235966
Transient receptor potential cation channel subfamily C member 4; Belongs to the transient receptor (TC 1.A.4) family.
    
 
 0.642
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
      
 0.635
LHFPL6
LHFPL tetraspan subfamily member 6.
   
  
 0.567
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.