STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108232699Serine and arginine rich splicing factor 9. (247 aa)    
Predicted Functional Partners:
srsf2
Serine and arginine rich splicing factor 2a.
   
 0.964
nxf1
Zgc:153681.
   
 0.961
LOC108248551
Serine and arginine rich splicing factor 7a.
   
0.951
LOC108246872
SRSF protein kinase 1b.
    
 0.946
srpk1
SRSF protein kinase 1a.
    
 0.946
srsf1
Serine and arginine rich splicing factor 1a.
  
0.934
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.906
rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.903
eif4a3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
  
 0.899
pabpn1
Poly(A) binding protein, nuclear 1.
   
 0.864
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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