STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
camk4Si:ch73-60h1.1; Belongs to the protein kinase superfamily. (479 aa)    
Predicted Functional Partners:
hdac5
Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.
   
 0.906
LOC108238551
Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.
   
 0.906
LOC108228616
Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.
   
 0.890
calm1
Calmodulin 3a (phosphorylase kinase, delta); Belongs to the calmodulin family.
   
 0.890
dcx
Uncharacterized protein.
 
  
 
 0.770
calml4
Calmodulin-like 4a.
   
 0.760
LOC108241768
Calmodulin.
   
 0.699
LOC108240935
Calmodulin.
   
 0.699
ppm1e
Protein phosphatase, Mg2+/Mn2+ dependent, 1E.
    
 0.573
ENSKMAP00000024602
Uncharacterized protein.
 
  
   0.532
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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