STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
txnl1Thioredoxin-like 1. (289 aa)    
Predicted Functional Partners:
psmd14
Uncharacterized protein.
   
 
 0.948
cops5
COP9 signalosome subunit 5.
   
 
 0.819
LOC108231613
Ras homolog family member Ca.
     
 0.661
LOC108235231
Uncharacterized protein.
     
 0.661
mysm1
Myb-like, SWIRM and MPN domains 1.
   
 
 0.654
Glrx3
Glutaredoxin 3.
   
  
 0.652
mpnd
MPN domain containing.
   
 
 0.642
Brcc3
BRCA1/BRCA2-containing complex, subunit 3.
   
 
 0.642
psmc3
Proteasome 26S subunit, ATPase 3; Belongs to the AAA ATPase family.
   
   0.641
tmx1
Thioredoxin-related transmembrane protein 1.
    
 0.635
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.