STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108244595LHFPL tetraspan subfamily member 5b. (234 aa)    
Predicted Functional Partners:
LOC108249876
Uncharacterized protein.
   
 0.548
pcdh15
Protocadherin-related 15a.
   
 0.548
LOC108249191
Protocadherin-related 15b.
   
 0.548
CIB2
Calcium and integrin binding family member 2.
   
 
 0.436
LOC108229998
Calcium and integrin binding family member 2.
   
 
 0.436
cib3
Calcium and integrin binding family member 3.
   
 
 0.436
cdh23
Cadherin-related 23.
   
 0.405
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.