STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108237820Solute carrier family 25 member 39; Belongs to the mitochondrial carrier (TC 2.A.29) family. (358 aa)    
Predicted Functional Partners:
cct6a
Chaperonin containing TCP1, subunit 6A (zeta 1).
   
 
 0.644
dtymk
Deoxythymidylate kinase (thymidylate kinase).
   
  
 0.642
caprin1
Cell cycle associated protein 1b.
      
 0.633
med30
Mediator complex subunit 30.
      
 0.633
LOC108250421
Cell cycle associated protein 1a.
      
 0.633
pcnp
PEST proteolytic signal containing nuclear protein.
      
 0.633
cct8
Chaperonin containing TCP1, subunit 8 (theta).
      
 0.577
cct2
Chaperonin containing TCP1, subunit 2 (beta).
   
 
 0.576
snd1
Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs.
      
 0.565
exosc3
Exosome component 3.
      
 0.565
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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