STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108242307SRY-box transcription factor 19b. (279 aa)    
Predicted Functional Partners:
LOC108232625
POU domain protein.
    
 0.753
LOC108244012
Homeobox domain-containing protein.
    
 0.597
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.537
pou3f3
POU domain protein.
   
 0.530
sall4
Spalt-like transcription factor 4.
   
 0.472
LOC108241224
Uncharacterized protein.
    
 0.448
LOC108236365
Junction plakoglobin a.
    
 0.448
nr5a2
Uncharacterized protein.
    
 0.427
nr5a1
Nuclear receptor subfamily 5, group A, member 1a.
    
 0.427
pou3f2
POU domain protein.
   
 0.417
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.