STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108236604Centrin 4. (173 aa)    
Predicted Functional Partners:
xpc
Xeroderma pigmentosum, complementation group C.
    
 0.942
LOC108249566
Ubiquitin-conjugating enzyme E2 variant 1.
   
 
 0.934
ENSKMAP00000029729
TMEM189_B_dmain domain-containing protein.
   
 
 0.934
sfi1
Uncharacterized protein.
    
 
 0.836
pcid2
PCI domain containing 2.
    
 
 0.745
mcm3ap
Minichromosome maintenance complex component 3 associated protein.
    
 
 0.731
rad23a
RAD23 homolog A, nucleotide excision repair protein a.
   
 0.728
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
   
 0.728
ddb2
Damage-specific DNA binding protein 2.
   
 0.712
LOC108240736
NME/NM23 family member 8; Belongs to the NDK family.
   
 
 0.702
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.