STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108246074Myosin XVAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2009 aa)    
Predicted Functional Partners:
ush1c
Usher syndrome 1C.
   
 0.596
LOC108245622
Whirlin b.
    
 0.536
ENSKMAP00000019777
Whirlin a.
    
 0.536
LOC108241240
Usher syndrome 1Ga (autosomal recessive).
   
 0.524
anks4b
Ankyrin repeat and sterile alpha motif domain containing 4B.
   
 0.524
LOC108248987
Usher syndrome 1Gb (autosomal recessive).
   
 0.524
neo1
Neogenin 1b.
    
  0.429
dcc
DCC netrin 1 receptor.
    
  0.429
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.