STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108230405Spermatogenesis associated 13. (1321 aa)    
Predicted Functional Partners:
LOC108245165
Rac family small GTPase 3b.
    
 0.945
LOC108237171
Uncharacterized protein.
    
 0.945
RAC1
Rac family small GTPase 1.
    
 0.945
RAC1-2
Uncharacterized protein.
    
 0.945
LOC108237172
Uncharacterized protein.
    
 0.945
RAC2
Rac family small GTPase 2.
    
 0.945
apc2
APC regulator of WNT signaling pathway 2.
   
 0.945
RAC1-4
Rac family small GTPase 1.
    
 0.945
arhgef4
Uncharacterized protein.
  
  
 
0.905
LOC108248645
Cell division cycle 42.
    
 0.690
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.