STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ogfod12-oxoglutarate and iron-dependent oxygenase domain containing 1. (522 aa)    
Predicted Functional Partners:
sycp3
Synaptonemal complex protein 3.
   
 
 0.929
tufm
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
   0.784
cpox
Coproporphyrinogen oxidase.
   
  
 0.691
etf1
Eukaryotic translation termination factor 1b.
   
 
 0.637
rps23
Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
    
 
 0.636
tsr1
TSR1 ribosome maturation factor.
   
    0.587
polr3a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
    0.574
bms1
BMS1 ribosome biogenesis factor.
   
    0.571
jmjd4
Jumonji domain containing 4.
      
 0.568
ogfod2
2-oxoglutarate and iron-dependent oxygenase domain containing 2.
      
 0.565
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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