STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108241726Uncharacterized protein. (468 aa)    
Predicted Functional Partners:
slc3a1
Solute carrier family 3 member 1.
   
 0.917
slc3a2
Solute carrier family 3 member 2a.
   
 0.688
LOC108249617
Solute carrier family 3 member 2b.
   
 0.688
LOC108240952
Si:dkey-202g17.3.
   
 0.688
alkbh3
AlkB homolog 3, alpha-ketoglutarate-dependent dioxygenase.
   
 0.544
kiaa0513
Zgc:91860.
   
 0.544
alkbh2
AlkB homolog 2, alpha-ketoglutarate-dependent dioxygenase.
   
 0.544
ENSKMAP00000024195
Si:dkey-28n18.9.
    
 
 0.516
snx6
Sorting nexin 6.
    
 
 0.501
Gpr63
G protein-coupled receptor 63.
    
 
 0.492
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.