STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prph2Peripherin 2a (retinal degeneration, slow). (344 aa)    
Predicted Functional Partners:
LOC108231131
Retinal outer segment membrane protein 1b.
  
 
0.731
thbs2
Thrombospondin 2a.
     
 0.684
KCNK12
Potassium two pore domain channel subfamily K member 12; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.
      
 0.677
nrxn1
Neurexin 1b.
   
  
 0.677
erlec1
Endoplasmic reticulum lectin 1.
      
 0.676
psme4
Proteasome activator subunit 4a.
      
 0.675
msh2
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
      
 0.674
LOC108247830
Neurexin 1.
   
  
 0.673
LOC108236782
Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.
   
  
 0.526
LOC108238150
Somatolactin alpha.
   
    0.519
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.