STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc38a7Solute carrier family 38 member 7. (453 aa)    
Predicted Functional Partners:
gad2
Glutamate decarboxylase 2.
     
 0.628
LOC108245351
Protein YIPF.
      
 0.626
LOC108247415
Ras-related GTP binding A.
   
 0.616
lamtor1
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.
    
 0.608
lamtor2
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.
    
 0.604
pnpo
Pyridoxamine 5'-phosphate oxidase.
      
 0.595
slc38a9
Solute carrier family 38 member 9.
      
 0.566
yipf3
Yip1 domain family, member 3.
      
 0.565
lamtor5
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.
    
 0.565
lamtor4
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4.
    
 0.542
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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