rabep2 protein (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rabep2

Rabaptin, RAB GTPase binding effector protein 2. (464 aa)

Predicted Functional Partners:

rabgef1

0.999

LOC108234478

0.999

LOC108240957

0.999

gapvd1

0.770

ankrd27

0.770

zfand4

0.762

LOC108230819

0.723

zfand5

0.723

LOC108249281

0.723

zfand3

0.723

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108230819	rabep2	ENSKMAP00000003361	ENSKMAP00000012383	Zgc:77486.	Rabaptin, RAB GTPase binding effector protein 2.	0.723
LOC108234478	LOC108240957	ENSKMAP00000026325	ENSKMAP00000027661	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.589
LOC108234478	rabep2	ENSKMAP00000026325	ENSKMAP00000012383	Uncharacterized protein.	Rabaptin, RAB GTPase binding effector protein 2.	0.999
LOC108234478	rabgef1	ENSKMAP00000026325	ENSKMAP00000025555	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1.	0.585
LOC108234478	zfand4	ENSKMAP00000026325	ENSKMAP00000006476	Uncharacterized protein.	Zinc finger, AN1-type domain 4.	0.890
LOC108240957	LOC108234478	ENSKMAP00000027661	ENSKMAP00000026325	RAB guanine nucleotide exchange factor (GEF) 1, like.	Uncharacterized protein.	0.589
LOC108240957	gapvd1	ENSKMAP00000027661	ENSKMAP00000002756	RAB guanine nucleotide exchange factor (GEF) 1, like.	GTPase activating protein and VPS9 domains 1.	0.585
LOC108240957	rabep2	ENSKMAP00000027661	ENSKMAP00000012383	RAB guanine nucleotide exchange factor (GEF) 1, like.	Rabaptin, RAB GTPase binding effector protein 2.	0.999
LOC108240957	rabgef1	ENSKMAP00000027661	ENSKMAP00000025555	RAB guanine nucleotide exchange factor (GEF) 1, like.	RAB guanine nucleotide exchange factor (GEF) 1.	0.573
LOC108240957	zfand4	ENSKMAP00000027661	ENSKMAP00000006476	RAB guanine nucleotide exchange factor (GEF) 1, like.	Zinc finger, AN1-type domain 4.	0.890
LOC108249281	rabep2	ENSKMAP00000012022	ENSKMAP00000012383	Uncharacterized protein.	Rabaptin, RAB GTPase binding effector protein 2.	0.723
ankrd27	rabep2	ENSKMAP00000010756	ENSKMAP00000012383	Ankyrin repeat domain 27 (VPS9 domain).	Rabaptin, RAB GTPase binding effector protein 2.	0.770
ankrd27	zfand4	ENSKMAP00000010756	ENSKMAP00000006476	Ankyrin repeat domain 27 (VPS9 domain).	Zinc finger, AN1-type domain 4.	0.515
gapvd1	LOC108240957	ENSKMAP00000002756	ENSKMAP00000027661	GTPase activating protein and VPS9 domains 1.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.585
gapvd1	rabep2	ENSKMAP00000002756	ENSKMAP00000012383	GTPase activating protein and VPS9 domains 1.	Rabaptin, RAB GTPase binding effector protein 2.	0.770
gapvd1	rabgef1	ENSKMAP00000002756	ENSKMAP00000025555	GTPase activating protein and VPS9 domains 1.	RAB guanine nucleotide exchange factor (GEF) 1.	0.585
gapvd1	zfand4	ENSKMAP00000002756	ENSKMAP00000006476	GTPase activating protein and VPS9 domains 1.	Zinc finger, AN1-type domain 4.	0.515
rabep2	LOC108230819	ENSKMAP00000012383	ENSKMAP00000003361	Rabaptin, RAB GTPase binding effector protein 2.	Zgc:77486.	0.723
rabep2	LOC108234478	ENSKMAP00000012383	ENSKMAP00000026325	Rabaptin, RAB GTPase binding effector protein 2.	Uncharacterized protein.	0.999
rabep2	LOC108240957	ENSKMAP00000012383	ENSKMAP00000027661	Rabaptin, RAB GTPase binding effector protein 2.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.999