STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
adamts9ADAM metallopeptidase with thrombospondin type 1 motif, 9. (1944 aa)    
Predicted Functional Partners:
slc25a26
Solute carrier family 25 member 26; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.589
LOC108244083
Solute carrier family 2 member 9, like 1.
      
 0.589
psmd6
Proteasome 26S subunit, non-ATPase 6.
      
 0.589
lrig1
Leucine-rich repeats and immunoglobulin-like domains 1.
   
  
 0.574
atxn7
Ataxin 7.
      
 0.527
thoc7
THO complex 7.
      
 0.527
prickle2
Prickle homolog 2b.
      
 0.518
magi1
Membrane associated guanylate kinase, WW and PDZ domain containing 1b.
      
 0.407
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.