STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nufip2Nuclear FMR1 interacting protein 2. (623 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
   
    0.817
fmr1
Fragile X mental retardation 1.
   
 
 0.761
LOC108249772
LsmAD domain-containing protein.
    
 
 0.738
fam98a
Family with sequence similarity 98 member A.
    
 
 0.663
qser1
Glutamine and serine rich 1.
   
  
 0.620
lsm12
LSM12 homolog b.
    
 
 0.596
g3bp1
GTPase activating protein (SH3 domain) binding protein 1.
    
 
 0.595
g3bp2
Zgc:56304.
    
 
 0.595
ddx6
DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.
   
 
 0.595
LOC108229619
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 
 0.595
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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