STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108249851Fli-1 proto-oncogene, ETS transcription factor b. (490 aa)    
Predicted Functional Partners:
LOC108229813
Spi-1 proto-oncogene b.
   
 0.602
cdh5
Cadherin 5; Cadherins are calcium-dependent cell adhesion proteins.
   
  
 0.532
runx2
Runt-related transcription factor.
   
 0.520
ENSKMAP00000011069
RUNX family transcription factor 1.
   
 0.520
LOC108249382
RUNX family transcription factor 1.
   
 0.520
runx3
Runt-related transcription factor.
   
 0.520
ENSKMAP00000010393
Runt domain-containing protein.
   
 0.496
npas1
Neuronal PAS domain protein 1.
    
 
 0.495
ENSKMAP00000009463
BHLH domain-containing protein.
    
 0.484
LOC108239578
T-cell acute lymphocytic leukemia 1.
    
 0.484
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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